Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Unknown Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
218 251

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,03:01 08:01,51:01 07:01,12:03 None None 05:03,05:03 14:01,03:02
RPKM HLA_DQB1 rpkm 1.44 ; HLA_C rpkm 124.67 ; HLA_B rpkm 92.98 ; HLA_DRB1 rpkm 0.97 ; HLA_A rpkm 142.76
Note In HLA_C 07:01 , HLA_DRB1 03:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Unknown Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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