Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Central_nervous_system Site Subtype Cerebellum
Primary Histology Primitive_neuroectodermal_tumour-Medulloblastoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Peritoneum

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
72 87

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,29:02 27:05,15:35 03:03,16:01 01:02,03:02 None 06:02,05:01 01:01,15:01
RPKM HLA_A rpkm 4.83 ; HLA_DRB1 rpkm 0.18 ; HLA_DQA1 rpkm 0.21 ; HLA_C rpkm 0.93 ; HLA_B rpkm 0.64 ; HLA_DQB1 rpkm 0.13
Note In HLA_A 02:01 and 29:02 , HLA_DRB1 15:01 , HLA_DQA1 01:02 and 03:02 , HLA_C 03:03 and 16:01 , HLA_B 27:05 and 15:35 , HLA_DQB1 06:02 and 05:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Central_nervous_system Site Subtype Cerebellum
Primary Histology Primitive_neuroectodermal_tumour-Medulloblastoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Peritoneum
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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