Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Central_nervous_system Site Subtype Cerebellum
Primary Histology Primitive_neuroectodermal_tumour-Medulloblastoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
55 66

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,02:28 07:02,27:05 07:02,03:03 05:02,05:02 None None 11:01,12:01
RPKM HLA_DQA1 rpkm 0.03 ; HLA_C rpkm 17.77 ; HLA_B rpkm 16.27 ; HLA_A rpkm 4.18 ; HLA_DRB1 rpkm 0.03
Note In HLA_DQA1 05:02 , HLA_A 02:28 , HLA_DRB1 11:01 and 12:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Central_nervous_system Site Subtype Cerebellum
Primary Histology Primitive_neuroectodermal_tumour-Medulloblastoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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