Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Other Histology Subtype Dysplasia
Gender Male Age None
Ethnicity None Tumour Source Primary

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
165 398

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
29:02,02:01 08:01,44:03 07:01,16:01 None None 02:02,02:02 03:01,07:01
RPKM HLA_A rpkm 107.48 ; HLA_B rpkm 167.6 ; HLA_C rpkm 141.39 ; HLA_DQB1 rpkm 0.11 ; HLA_DRB1 rpkm 0.59
Note In HLA_B 44:03 , HLA_C 07:01 , HLA_DQB1 02:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Other Histology Subtype Dysplasia
Gender Male Age None
Ethnicity None Tumour Source Primary
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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