Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Pharynx, Head_neck
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Pleura, Ns

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
98 111

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
30:01,26:01 13:02,55:01 06:02,01:02 01:02,01:02 None 03:04,03:04 11:01,07:01
RPKM HLA_A rpkm 117.01 ; HLA_DQA1 rpkm 0.03 ; HLA_C rpkm 68.83 ; HLA_DQB1 rpkm 0.09 ; HLA_DRB1 rpkm 0.57 ; HLA_B rpkm 69.71
Note In HLA_DQA1 01:02 , HLA_DQB1 03:04 , HLA_DRB1 11:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Pharynx, Head_neck
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Pleura, Ns
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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