Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
388 998

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,03:01 15:01,15:01 03:04,03:04 01:02,01:02 None 06:02,06:02 15:01,04:03
RPKM HLA_DQB1 rpkm 4.05 ; HLA_A rpkm 183.01 ; HLA_DRB1 rpkm 1.37 ; HLA_C rpkm 157.2 ; HLA_DQA1 rpkm 0.2 ; HLA_B rpkm 232.46
Note In HLA_DRB1 15:01 and 04:03 , HLA_C 03:04 , HLA_DQA1 01:02 , HLA_B 15:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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