Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Pharynx
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
632 1460

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,01:01 15:17,37:04 07:01,07:01 None None None None
RPKM HLA_A rpkm 78.37 ; HLA_B rpkm 25.29 ; HLA_C rpkm 116.67
Note In HLA_C 07:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Pharynx
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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