Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Smooth_muscle, Striated_muscle
Primary Histology Leiomyoblastoma, Rhabdoid_tumour Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
222 494

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,24:02 08:01,07:02 07:06,07:06 None None 06:13,06:13 12:01,11:08
RPKM HLA_A rpkm 6.91 ; HLA_DQB1 rpkm 0.03 ; HLA_B rpkm 0.8 ; HLA_C rpkm 35.03 ; HLA_DRB1 rpkm 0.05
Note In HLA_DQB1 06:13 , HLA_C 07:06 , HLA_DRB1 12:01 and 11:08. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Smooth_muscle, Striated_muscle
Primary Histology Leiomyoblastoma, Rhabdoid_tumour Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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