Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon, Ns
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Female, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Nan, Ns

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
2900 3896

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,24:02 44:02,44:02 05:01,05:01 05:02,03:02 None 06:13,06:13 15:01,04:05
RPKM HLA_B rpkm 7.8 ; HLA_DRB1 rpkm 0.11 ; HLA_DQB1 rpkm 0.31 ; HLA_C rpkm 61.19 ; HLA_A rpkm 273.78 ; HLA_DQA1 rpkm 0.03
Note In HLA_DRB1 15:01 and 04:05 , HLA_DQB1 06:13 , HLA_DQA1 05:02 and 03:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon, Ns
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Female, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Nan, Ns
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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