Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype B_cell_lymphoma_unspecified, Mantle_cell_lymphoma
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
169 395

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:05,02:05 50:01,07:02 06:02,07:02 05:01,01:02 None 06:11,03:01 11:03,15:01
RPKM HLA_C rpkm 243.48 ; HLA_DRB1 rpkm 127.56 ; HLA_A rpkm 452.57 ; HLA_DQA1 rpkm 115.45 ; HLA_DQB1 rpkm 51.36 ; HLA_B rpkm 223.81
Note In HLA_DRB1 11:03 , HLA_A 02:05 , HLA_DQB1 06:11. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype B_cell_lymphoma_unspecified, Mantle_cell_lymphoma
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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