Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
171 425

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
31:01,31:01 37:01,35:08 04:01,06:02 04:01,04:01 None 04:02,04:02 08:01,03:01
RPKM HLA_A rpkm 40.12 ; HLA_B rpkm 32.33 ; HLA_C rpkm 92.91 ; HLA_DQA1 rpkm 0.26 ; HLA_DQB1 rpkm 7.83 ; HLA_DRB1 rpkm 0.89
Note In HLA_B 35:08. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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