Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Ductal_carcinoma
Gender Unknown, Female Age Not Available
Ethnicity African_american Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
228 492

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:02,02:02 15:10,15:10 03:04,04:01 01:02,05:02 None 06:13,06:13 03:08,04:08
RPKM HLA_B rpkm 3.69 ; HLA_A rpkm 17.6 ; HLA_DRB1 rpkm 0.07 ; HLA_DQB1 rpkm 0.02 ; HLA_DQA1 rpkm 0.05 ; HLA_C rpkm 25.89
Note In HLA_B 15:10 , HLA_A 02:02 , HLA_DRB1 03:08 , HLA_DQB1 06:13 , HLA_DQA1 01:02 and 05:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Ductal_carcinoma
Gender Unknown, Female Age Not Available
Ethnicity African_american Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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