Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Metaplastic_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
1731 4220

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
30:04,68:02 58:01,53:01 15:05,04:01 None None 06:02,06:02 13:03,13:03
RPKM HLA_B rpkm 36.37 ; HLA_C rpkm 77.62 ; HLA_DQB1 rpkm 0.25 ; HLA_A rpkm 180.31 ; HLA_DRB1 rpkm 0.03
Note In HLA_C 15:05 , HLA_DQB1 06:02 , HLA_DRB1 13:03. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Metaplastic_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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