Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
294 714

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:01,23:01 51:01,15:03 02:02,02:02 01:02,01:02 None 06:02,06:02 11:01,14:76
RPKM HLA_B rpkm 117.8 ; HLA_DQB1 rpkm 3.86 ; HLA_A rpkm 147.39 ; HLA_C rpkm 195.37 ; HLA_DRB1 rpkm 0.94 ; HLA_DQA1 rpkm 0.05
Note In HLA_B 51:01 and 15:03 , HLA_DQB1 06:02 , HLA_DQA1 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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