Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line, Ns HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female, Unknown Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan, Ns

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
235 535

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
30:02,03:01 78:01,15:16 16:01,16:01 None None 05:01,05:01 01:02,07:01
RPKM HLA_DRB1 rpkm 4.51 ; HLA_C rpkm 193.04 ; HLA_A rpkm 102.56 ; HLA_DQB1 rpkm 0.61 ; HLA_B rpkm 190.76
Note In HLA_A 30:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line, Ns HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female, Unknown Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan, Ns
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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