Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Metastasis, Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
272 644

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
31:01,24:02 51:01,07:02 14:02,07:02 04:01,04:01 None 04:02,04:02 08:02,01:01
RPKM HLA_A rpkm 60.7 ; HLA_B rpkm 84.43 ; HLA_C rpkm 76.87 ; HLA_DQA1 rpkm 19.19 ; HLA_DQB1 rpkm 19.24 ; HLA_DRB1 rpkm 50.19
Note In HLA_A 24:02 , HLA_DQB1 04:02 , HLA_DRB1 08:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Metastasis, Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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