Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Fibrous_tissue_and_uncertain_origin
Primary Histology Fibrosarcoma Histology Subtype Ns
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Acetabulum

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
192 405

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:01,31:01 27:05,27:05 02:02,02:02 04:01,04:01 None 04:01,04:01 03:01,14:05
RPKM HLA_B rpkm 5.59 ; HLA_C rpkm 16.48 ; HLA_DQB1 rpkm 0.03 ; HLA_DRB1 rpkm 0.19 ; HLA_DQA1 rpkm 0.03 ; HLA_A rpkm 23.96
Note In HLA_DQB1 04:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Fibrous_tissue_and_uncertain_origin
Primary Histology Fibrosarcoma Histology Subtype Ns
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Acetabulum
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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