Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity None Tumour Source Primary

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
3813 9648

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,02:01 51:01,51:01 02:02,16:01 None None 06:02,06:02 15:01,15:01
RPKM HLA_A rpkm 198.2 ; HLA_B rpkm 56.98 ; HLA_C rpkm 64.79 ; HLA_DQB1 rpkm 0.79 ; HLA_DRB1 rpkm 4.77
Note In HLA_A 02:01 , HLA_DQB1 06:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity None Tumour Source Primary
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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