Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
326 774

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,24:02 15:01,15:01 03:03,03:03 03:02,01:02 None 06:03,06:03 13:27,14:121
RPKM HLA_B rpkm 182.12 ; HLA_DRB1 rpkm 0.41 ; HLA_DQB1 rpkm 0.35 ; HLA_DQA1 rpkm 0.06 ; HLA_A rpkm 605.55 ; HLA_C rpkm 387.06
Note In HLA_B 15:01 , HLA_DRB1 13:27 , HLA_DQB1 06:03 , HLA_DQA1 03:02 and 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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