Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
117 138

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:02,74:01 14:01,14:01 08:02,04:01 04:01,04:01 None 05:01,06:04 07:01,11:08
RPKM HLA_DQA1 rpkm 0.03 ; HLA_DQB1 rpkm 0.13 ; HLA_B rpkm 2.81 ; HLA_C rpkm 15.98 ; HLA_A rpkm 112.4 ; HLA_DRB1 rpkm 0.06
Note In HLA_DQB1 06:04 , HLA_B 14:01 , HLA_DRB1 11:08. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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