Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
18 21

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
29:02,02:01 14:02,44:02 05:01,05:01 None None 04:01,04:01 14:06,03:08
RPKM HLA_A rpkm 71.96 ; HLA_C rpkm 151.39 ; HLA_DRB1 rpkm 0.03 ; HLA_DQB1 rpkm 0.03 ; HLA_B rpkm 120.81
Note In HLA_A 02:01 , HLA_DRB1 14:06 and 03:08 , HLA_DQB1 04:01 , HLA_B 14:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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