Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
70 78

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,03:01 40:01,35:03 04:01,03:04 03:02,03:02 04:01,78:01 05:01:01,06:02 07:01,03:05
RPKM HLA_B rpkm nan ; HLA_C rpkm nan ; HLA_DRB1 rpkm nan ; HLA_DQB1 rpkm nan ; HLA_DPB1 rpkm nan ; HLA_DQA1 rpkm 0.03 ; HLA_DRB1 rpkm 0.03 ; HLA_C rpkm 135.82 ; HLA_A rpkm nan ; HLA_A rpkm 264.44 ; HLA_B rpkm 136.46
Note In HLA_DQA1 03:02 , HLA_DRB1 03:05 , HLA_B 40:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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