Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
97 107

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,32:01 18:01,46:29 07:06,12:03 03:02,03:02 None 06:13,06:13 15:01,13:07
RPKM HLA_DQB1 rpkm 0.15 ; HLA_DRB1 rpkm 0.15 ; HLA_C rpkm 81.31 ; HLA_B rpkm 15.8 ; HLA_DQA1 rpkm 0.03 ; HLA_A rpkm 134.58
Note In HLA_DQB1 06:13 , HLA_C 07:06 , HLA_DQA1 03:02 , HLA_A 24:02 and 32:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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