Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Spleen
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
47 52

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,11:01 08:01,07:02 07:01,04:01 05:01,02:01 None 02:01,02:01 03:01,07:01
RPKM HLA_A rpkm 251.98 ; HLA_B rpkm 726.77 ; HLA_DQA1 rpkm 210.45 ; HLA_DQB1 rpkm 109.37 ; HLA_C rpkm 401.9 ; HLA_DRB1 rpkm 280.06
Note In HLA_DQB1 02:01 , HLA_C 07:01 and 04:01 , HLA_DRB1 03:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Spleen
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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