Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
339 402

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,02:01 49:01,49:01 07:01,07:01 01:03,01:03 None 06:03,06:03 13:01,03:38
RPKM HLA_A rpkm 168.02 ; HLA_DQA1 rpkm 2.12 ; HLA_B rpkm 198.43 ; HLA_C rpkm 252.47 ; HLA_DRB1 rpkm 163.01 ; HLA_DQB1 rpkm 45.39
Note In HLA_A 02:01 , HLA_DQA1 01:03 , HLA_C 07:01 , HLA_DRB1 13:01 , HLA_DQB1 06:03. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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