Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
366 437

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,02:01 07:02,37:04 07:02,07:02 01:02,01:02 None 06:02,06:02 15:01,15:01
RPKM HLA_A rpkm 62.83 ; HLA_B rpkm 11.52 ; HLA_C rpkm 21.55 ; HLA_DQA1 rpkm 0.31 ; HLA_DQB1 rpkm 8.58 ; HLA_DRB1 rpkm 3.89
Note In HLA_A 02:01 , HLA_DQA1 01:02 , HLA_DQB1 06:02 , HLA_DRB1 15:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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