Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity None Tumour Source Ns

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
447 1003

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,02:01 07:02,35:03 04:01,07:02 01:02,01:02 None 05:03,06:07 14:01,13:02
RPKM HLA_DQA1 rpkm 3.64 ; HLA_C rpkm 187.36 ; HLA_DQB1 rpkm 10.03 ; HLA_B rpkm 171.67 ; HLA_DRB1 rpkm 66.19 ; HLA_A rpkm 203.16
Note In HLA_DQB1 06:07 , HLA_B 35:03 , HLA_DRB1 14:01 and 13:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity None Tumour Source Ns
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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