Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Skin
Primary Histology Lymphoid_neoplasm Histology Subtype Mycosis_fungoides-Sezary_syndrome
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
201 224

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,01:01 15:01,15:01 03:03,03:03 03:02,03:02 None 03:02,03:02 04:01,14:103
RPKM HLA_B rpkm 125.99 ; HLA_C rpkm 81.81 ; HLA_A rpkm 124.34 ; HLA_DQB1 rpkm 23.17 ; HLA_DRB1 rpkm 79.64 ; HLA_DQA1 rpkm 105.8
Note In HLA_B 15:01 , HLA_DQB1 03:02 , HLA_DRB1 04:01 , HLA_DQA1 03:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Skin
Primary Histology Lymphoid_neoplasm Histology Subtype Mycosis_fungoides-Sezary_syndrome
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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