Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Small_intestine Site Subtype Duodenum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
81 93

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,30:02 39:10,44:03 04:01,12:03 05:02,02:01 None 05:01,05:01 04:05,03:42
RPKM HLA_DRB1 rpkm 0.06 ; HLA_DQA1 rpkm 0.03 ; HLA_A rpkm 8.33 ; HLA_B rpkm 1.99 ; HLA_DQB1 rpkm 0.06 ; HLA_C rpkm 17.62
Note In HLA_DRB1 04:05 , HLA_DQA1 05:02 , HLA_B 39:10 and 44:03 , HLA_DQB1 05:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Small_intestine Site Subtype Duodenum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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