Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
951 2524

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,03:01 07:02,35:02 04:01,07:02 01:01,01:01 None 05:03,03:01 14:01,11:04
RPKM HLA_A rpkm 108.3 ; HLA_B rpkm 20.97 ; HLA_C rpkm 54.41 ; HLA_DQA1 rpkm 6.88 ; HLA_DQB1 rpkm 26.07 ; HLA_DRB1 rpkm 151.52
Note In HLA_A 24:02 , HLA_B 35:02 , HLA_DQA1 01:01 , HLA_DRB1 14:01 and 11:04. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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