Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Ns, Transitional_cell_carcinoma
Gender Unknown, Male Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
208 476

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
32:01,02:01 44:02,51:01 15:02,05:01 01:02,03:02 None 02:02,02:02 01:16,11:30
RPKM HLA_DQB1 rpkm 0.06 ; HLA_C rpkm 242.67 ; HLA_DRB1 rpkm 0.13 ; HLA_DQA1 rpkm 0.03 ; HLA_B rpkm 223.99 ; HLA_A rpkm 136.67
Note In HLA_DQB1 02:02 , HLA_C 15:02 , HLA_DRB1 11:30 , HLA_DQA1 01:02 and 03:02 , HLA_A 32:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Ns, Transitional_cell_carcinoma
Gender Unknown, Male Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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