Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Pleura Site Subtype Ns
Primary Histology Mesothelioma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
65 72

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,02:05 49:01,55:01 03:04,07:01 05:02,05:02 None 06:04,06:04 04:05,11:30
RPKM HLA_C rpkm 125.46 ; HLA_DQA1 rpkm 0.08 ; HLA_DQB1 rpkm 0.04 ; HLA_DRB1 rpkm 0.15 ; HLA_B rpkm 75.99 ; HLA_A rpkm 234.0
Note In HLA_C 03:04 and 07:01 , HLA_DQA1 05:02 , HLA_DQB1 06:04 , HLA_DRB1 04:05 and 11:30 , HLA_A 02:05. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Pleura Site Subtype Ns
Primary Histology Mesothelioma Histology Subtype Ns
Gender Male Age None
Ethnicity Caucasian Tumour Source Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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