Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Diffuse_large_b_cell_lymphoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
325 735

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,02:01 27:05,07:02 07:02,04:01 03:02,01:02 None 03:01,05:02 04:01,16:01
RPKM HLA_C rpkm 141.4 ; HLA_DQA1 rpkm 150.82 ; HLA_B rpkm 253.96 ; HLA_DQB1 rpkm 42.56 ; HLA_DRB1 rpkm 112.52 ; HLA_A rpkm 187.9
Note In HLA_C 04:01 , HLA_DQA1 03:02 , HLA_B 27:05 , HLA_DRB1 04:01 and 16:01 , HLA_A 02:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Diffuse_large_b_cell_lymphoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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