Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Lymph_node, Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Male Age Not Available
Ethnicity Asian Tumour Source Metastasis, Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
718 1773

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,24:02 52:01,15:01 04:01,12:02 05:01,03:02 None 03:03,03:03 11:01,04:06
RPKM HLA_B rpkm 281.03 ; HLA_C rpkm 157.75 ; HLA_DQB1 rpkm 72.54 ; HLA_DQA1 rpkm 211.56 ; HLA_A rpkm 114.25 ; HLA_DRB1 rpkm 233.74
Note In HLA_B 15:01 , HLA_DQA1 03:02 , HLA_DRB1 11:01 and 04:06. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Lymph_node, Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Male Age Not Available
Ethnicity Asian Tumour Source Metastasis, Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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