Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
2469 5974

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,02:01 07:02,07:02 07:02,07:02 None 13:01,13:01 03:02,03:02 13:10,13:10
RPKM HLA_A rpkm nan ; HLA_B rpkm nan ; HLA_DQB1 rpkm nan ; HLA_C rpkm nan ; HLA_DRB1 rpkm nan ; HLA_C rpkm 2.16 ; HLA_DRB1 rpkm 0.03 ; HLA_DPB1 rpkm nan ; HLA_B rpkm 11.18 ; HLA_A rpkm 1.56 ; HLA_DQB1 rpkm 0.05
Note In HLA_DRB1 13:10 , HLA_A 02:01 , HLA_DQB1 03:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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