Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
203 235

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,02:01 18:01,44:02 05:01,05:01 05:02,05:02 None 06:11,02:02 11:09,15:02
RPKM HLA_B rpkm 0.34 ; HLA_C rpkm 35.67 ; HLA_A rpkm 25.39 ; HLA_DQB1 rpkm 0.39 ; HLA_DRB1 rpkm 0.13 ; HLA_DQA1 rpkm 0.07
Note In HLA_B 18:01 and 44:02 , HLA_DQB1 06:11 and 02:02 , HLA_DRB1 15:02 , HLA_DQA1 05:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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