Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Ns, Middle_third
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
737 1832

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
26:02,02:07 40:06,46:01 08:01,01:02 None None 06:01,06:01 11:30,15:01
RPKM HLA_DRB1 rpkm 0.1 ; HLA_DQB1 rpkm 0.03 ; HLA_C rpkm 15.67 ; HLA_A rpkm 23.78 ; HLA_B rpkm 14.21
Note In HLA_DRB1 11:30 and 15:01 , HLA_A 26:02 and 02:07. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Ns, Middle_third
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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