Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Upper_third
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Female Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
692 1755

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,33:03 46:29,67:02 14:03,12:02 None None None None
RPKM HLA_A rpkm 49.79 ; HLA_B rpkm 0.43 ; HLA_C rpkm 9.07
Note In HLA_C 14:03 and 12:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Upper_third
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Female Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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