Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Middle_third
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
805 1919

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,11:01 13:01,13:01 03:04,03:04 03:02,05:02 None 04:01,04:01 04:05,14:103
RPKM HLA_A rpkm 202.02 ; HLA_DQB1 rpkm 25.03 ; HLA_B rpkm 239.02 ; HLA_C rpkm 232.83 ; HLA_DQA1 rpkm 4.78 ; HLA_DRB1 rpkm 21.13
Note In HLA_C 03:04 , HLA_DQA1 03:02 and 05:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Middle_third
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Japanese, Asian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
Settings

Logo Header


Navbar Header


Sidebar

Background