Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Lymph_node, Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Bone_marrow

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
702 1640

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,03:01 51:01,51:01 15:02,02:02 03:02,05:01 None 03:03,03:03 04:04,11:01
RPKM HLA_B rpkm 412.81 ; HLA_DQA1 rpkm 152.6 ; HLA_C rpkm 303.22 ; HLA_DRB1 rpkm 136.98 ; HLA_A rpkm 330.8 ; HLA_DQB1 rpkm 35.5
Note In HLA_DQA1 03:02 , HLA_C 15:02 , HLA_DRB1 04:04 and 11:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Lymph_node, Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Hodgkin_lymphoma
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Bone_marrow
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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