Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
186 444

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,02:01 15:01,15:01 03:03,03:03 01:02,02:01 None 06:11,06:11 11:02,03:17
RPKM HLA_A rpkm 197.92 ; HLA_B rpkm 41.81 ; HLA_DQA1 rpkm 0.23 ; HLA_DQB1 rpkm 2.38 ; HLA_C rpkm 119.66 ; HLA_DRB1 rpkm 0.15
Note In HLA_B 15:01 , HLA_DQA1 01:02 , HLA_DQB1 06:11 , HLA_DRB1 03:17. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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