Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
2551 3267

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:40,30:01 56:01,18:01 01:02,07:06 03:02,05:02 None 03:02,03:02 11:04,13:47
RPKM HLA_A rpkm 49.71 ; HLA_B rpkm 3.15 ; HLA_DQB1 rpkm 0.21 ; HLA_DQA1 rpkm 0.26 ; HLA_DRB1 rpkm 0.15 ; HLA_C rpkm 12.37
Note In HLA_A 02:40 , HLA_DQB1 03:02 , HLA_DQA1 03:02 and 05:02 , HLA_DRB1 11:04 , HLA_C 07:06. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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