Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
152 178

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,02:01 18:01,15:01 07:02,05:01 01:02,02:01 None None 11:30,15:01
RPKM HLA_B rpkm 16.62 ; HLA_DQA1 rpkm 0.04 ; HLA_C rpkm 64.76 ; HLA_DRB1 rpkm 0.27 ; HLA_A rpkm 178.5
Note In HLA_B 15:01 , HLA_DQA1 01:02 , HLA_DRB1 11:30 and 15:01 , HLA_A 02:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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