Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Unknown Age None
Ethnicity Asian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
150 178

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,26:01 39:01,46:01 01:02,07:02 01:02,05:02 None 06:04,02:02 13:27,xx
RPKM HLA_DQB1 rpkm 0.04 ; HLA_DQA1 rpkm 0.07 ; HLA_A rpkm 132.11 ; HLA_B rpkm 19.03 ; HLA_DRB1 rpkm 0.07 ; HLA_C rpkm 49.42
Note In HLA_DQB1 06:04 and 02:02 , HLA_DQA1 01:02 and 05:02 , HLA_B 39:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Unknown Age None
Ethnicity Asian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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