Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
1501 3662

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,32:01 57:01,27:08 06:02,06:02 05:02,03:02 None 06:13,06:13 13:10,09:07
RPKM HLA_A rpkm 63.51 ; HLA_B rpkm 25.28 ; HLA_C rpkm 89.38 ; HLA_DQA1 rpkm 0.03 ; HLA_DQB1 rpkm 0.73 ; HLA_DRB1 rpkm 0.03
Note In HLA_A 32:01 , HLA_B 27:08 , HLA_DQA1 05:02 and 03:02 , HLA_DQB1 06:13 , HLA_DRB1 13:10. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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