Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Metastasis, Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
342 736

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:02,24:02 08:01,53:01 04:01,07:01 05:02,06:01 None 05:01,05:01 13:02,03:05
RPKM HLA_DRB1 rpkm 0.39 ; HLA_C rpkm 49.62 ; HLA_A rpkm 13.13 ; HLA_DQB1 rpkm 0.85 ; HLA_DQA1 rpkm 0.07 ; HLA_B rpkm 5.01
Note In HLA_DRB1 13:02 and 03:05 , HLA_C 07:01 , HLA_DQA1 05:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ductal_carcinoma
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Metastasis, Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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