Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Central_nervous_system

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
1046 2506

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,24:02 39:06,51:08 07:02,16:02 None None 04:01,04:01 13:07,13:07
RPKM HLA_A rpkm 13.37 ; HLA_B rpkm 11.57 ; HLA_C rpkm 75.07 ; HLA_DQB1 rpkm 0.25 ; HLA_DRB1 rpkm 0.22
Note In HLA_B 39:06 and 51:08 , HLA_DQB1 04:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Central_nervous_system
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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