Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
829 931

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,24:02 15:01,15:01 03:03,03:03 01:03,01:03 None 06:03,06:03 13:01,03:17
RPKM HLA_DQB1 rpkm 129.68 ; HLA_A rpkm 435.91 ; HLA_DQA1 rpkm 22.24 ; HLA_C rpkm 135.25 ; HLA_DRB1 rpkm 220.05 ; HLA_B rpkm 116.75
Note In HLA_DQB1 06:03 , HLA_DQA1 01:03 , HLA_DRB1 13:01 and 03:17 , HLA_B 15:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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