Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Metastasis, Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
427 1034

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
23:01,30:02 27:03,53:01 04:01,02:02 05:02,02:01 None 06:13,03:04 04:03,13:100
RPKM HLA_DQA1 rpkm 0.1 ; HLA_DQB1 rpkm 0.09 ; HLA_B rpkm 46.11 ; HLA_DRB1 rpkm 0.28 ; HLA_A rpkm 194.74 ; HLA_C rpkm 189.77
Note In HLA_DQA1 05:02 , HLA_DQB1 06:13 and 03:04 , HLA_B 27:03 , HLA_DRB1 04:03. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Breast Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Black, African_american Tumour Source Metastasis, Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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