Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
927 2103

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,01:01 08:01,08:01 07:01,07:01 05:01,03:02 None 02:01,02:01 03:01,03:01
RPKM HLA_A rpkm 179.42 ; HLA_C rpkm 277.33 ; HLA_DQA1 rpkm 0.29 ; HLA_DQB1 rpkm 93.13 ; HLA_B rpkm 206.71 ; HLA_DRB1 rpkm 558.73
Note In HLA_C 07:01 , HLA_DQA1 03:02 , HLA_DQB1 02:01 , HLA_DRB1 03:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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